Feedback from users is that small, hourly doses work better (in most cases) that 3 large doses/day.
It's possible MMS1 doses are not completing activation in your stomach, so you may be getting more CLO2 from CDS which needs no further activation.
You are finding what works best for your body, which is the right idea. Some people get better results taking MMS1/CDS/CDH as many hours as they can take it and not just 8 hours/day.
Supplements may interfere when on MMS protocols. Try with and without and let us know the results.